GEvol – DFG SPP 2349

Publications

• Chen, Yao-Chung; Maupas, Arnaud; Nowick, Katja
  Regulatory networks of KRAB zinc finger genes and transposable elements changed during human brain evolution and disease
  In: eLife (2025)
  Link






• Feldmeyer, Barbara; Bornberg-Bauer, Erich; Dohmen, Elias; Fouks, Bertrand; Heckenhauer, Jacqueline; Huylmans, Ann Kathrin; Jones, Alun RC; Stolle, Eckart and Harrison, Marc C
  Comparative Evolutionary Genomics in Insects
  In: Methods in Molecular Biology (2023)
  Link






• Frandsen, Paul B; Hotaling, Scott; Powell, Ashlyn; Heckenhauer, Jacqueline; Kawahara, Akito Y.; Baker, Richard H.; Hayashi, Cheryl Y.; Rios-Touma, Blanca; Holzenthal, Ralph; Pauls U., Steffen and Stewart, Russel J.
  Allelic resolution of insect and spider silk genes reveals hidden genetic diversity
  In: PNAS (2023)
  Link




• Fraser, Roxanne; Moraa, Ruth; Djolai, Annika; Meisenheimer, Nils; Laube, Sophie; Vicoso, Beatriz and Huylmans, Ann Kathrin
  Recurrent sex chromosome turn-over in termites
  In: GBE (2024)
  Link




• Glaser-Schmitt; Amanda, Lebherz, Marie; Sayda, Ezgi; Bornberg-Bauer, Erich and Parsch, John
  Expression of de novo open reading frames in natural populations of Drosophila melanogaster
  In: Forthcoming
  




• Grandchamp, Anna; Czuppon, Pete and Bornberg-Bauer, Erich
  Quantification and modeling of turnover dynamics of de novo transcripts in Drosophila melanogaster
  In: Nucleic Acids Research (2024)
  Link




• Grandchamp, Anna; Kühl, Lucas; Lebherz, Marie; Brüggemann, Kathrin; Parsch, John and Bornberg-Bauer, Erich
  Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster
  In: Genome Research (2023)
  Link




• Heckenhauer, Jacqueline; Stewart, Russel J.; Rios-Touma, Blanca; Tshering, Dorji; Frandsen, Paul B. and Pauls, Steffen U.
  Characterization of the primary structure of the major silk gene, h-fibroin, across caddisfly (Trichoptera) suborders
  In: IScience (2023)
  Link




• Heckenhauer, Jacqueline; Deng, X; Kuranishi BR; Pauls , Steffen U. and Frandsen, Paul B.
  De novo whole genome assemblies of unusual case-making caddisflies highlight genomic convergence in the composition of the major silk gene (h-fibroin)
  In: J Exp Zool B, 2025, in press
  




• Heckenhauer, Jacqueline; Plotkin, David; Martinez, Jose I; Bethin, Jacob; Pauls , Steffen U.; Frandsen, Paul B. and Kawahara, Akito Y.
  Genomic resources of two aquatic Lepidoptera, Elophila obliteralis and Hyposmocoma kahamanoa, reveal similarities with Trichoptera in amino acid composition of major silk genes
  In: G3 (Bethesda) (2024)
  Link




• Janssen, Ralf and Pechmann, Matthias
  Expression of posterior Hox genes and opisthosomal appendage development in a mygalomorph spider.
  In: Development Genes and Evolution (2023)
  Link




• Käther, Karl; Lemke, Steffen and Stadler, Peter.F.
  Annotation-Free Identification of Potential Synteny Anchors.

  In: Bioinformatics and Biomedical Engineering (2023)
  Link




• Länger, Zoe M.; Israel, Elisa; Engelhardt, Jan; Kalita, Agata I.; Keller Valsecchi, Claudia I.; Kurtz, Joachim and Projaska, Sonja J.
  Multiomics reveal associations between CpG methylation, histone modifications and transcription in a species that has lost DNMT3, the Colorado potato beetle

  In: Preprint
  Link




• Lebherz, Marie; Fouks, Bertrand; Schmidt, Julian; Bornberg-Bauer, Erich and Grandchamp, Anna
  DNA Transposons favour de novo transcript emergence through enrichment of transcription factor binding motifs
  In: Genome Biology and Evolution (2024)
  Link




• Liu, Cong; Aumont, Céderic; Mikhailova, Alina A.; Audisio, Tracy; Hellemans, Simon; Weng, Yi M; He, Shulin; Clitheroe, Crystal; Wang Zonqing; Haifig, Ives; Sillam-Dussès, David; Buček, Ales; Tokuda, Gaku; Šobotník, Jan; Harrison, Marc C. ; McMahon, Dino P. and Bourguignon, Tom
  Unravelling termite evolution with 47 high-resolution genome assemblies
  In: BioRxiv (2025)
  Link




• Mikhailova, Alina; Rinke, Sarah and Harrison, Marc C.
  Genomic signatures of eusocial evolution in insects.
  In: Current Opinion in Insect Science (2023)
  Link




• Omole, Adekanmi Daniel; Czuppon, Peter
  Maintenance of long-term transposable element activity through regulation by nonautonomous elements
  In: Genetics (2025)
  Link




• Powell, Ashlyn; Heckenhauer, Jaqueline; Pauls, Steffen U.; Ríos-Touma, Blanca; Kuranishi, Ryoichi B.; Holzenthal Ralph W.; Razuri-Gonzales, Ernesto; Bybee, Seth and Frandsen, Paul B.
  Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera)
  In: Preprint
  Link




• Ravi, Bharat I.; Grandchamp, Anna and Bornberg-Bauer, Erich
  How antisense transcripts can evolve to encode novel proteins
  In: Nature Communications (2024)
  Link




• Remmel, Andreas; Lemke, Steffen and Stadler, Peter.F.
  Transiently expressed genes with recent evolutionary origin continue to become enriched at life stage transitions of flies.

  
  In: J Exp Zool B, 2025, in press
  




• Sproul, John S.; Hotaling, Scott; Heckenhauer, Jaqueline; Powell, Ashlyn; Marshall, Dez; Larracuente, Amanda M.; Kelley, Joanna L.; Pauls, Steffen U. and Frandsen, Pauls B.
  600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges
  In: Genome Research (2023)
  Link




• Schrader, Lukas; Rinke, Janina; Errbii, Mohammed; Teresi, Scott; van den Bos, Esther; Xiong, Zijun; Vizueta, Joel; Boomsma, Jacobus; Gadau, Jürgen and Zhang, Guojie
  The impact of transposable elements on the adaptive radiation of ants.
  In: submitted
  




• Standring, Samantha; Heckenhauer, Jaqueline; Stewart, and Frandsen, Paul B.
  Unraveling the genetics of underwater caddisfly silk.
  In: Trends in Genetics. (2025)
  Link




• Turetzek, Natascha; Munegowda, Chetan; Pechmann, Matthias and Prpic-Schäper Nikolai-Michael
  Gene and genome duplication in spiders.
  In: J Exp Zool B, 2025, in press